jaspar-database

Query the JASPAR database for Transcription Factor (TF) binding profiles. Use when retrieving Position Frequency Matrices (PFMs) or Position Weight Matrices (PWMs) for specific TFs, resolving gene symbols to JASPAR Matrix IDs, or getting TF metadata. Supports multiple output formats (MEME, TRANSFAC, PFM, JASPAR, YAML).

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Retrieve a transcription factor motif

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Use the jaspar-database skill to resolve my transcription factor name to a JASPAR Matrix ID using the species or Taxon ID I provide. Retrieve its position frequency matrix and summarize its TF class, family, and available external database links.

Required inputs

A transcription factor name and its species or NCBI Taxon ID.
uv installed and on PATH; follow the skill's setup guidance if missing.
Complete the skill's JASPAR terms-of-use notification if not already recorded in the workspace.

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