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Last commit on July 12, 2026·Created on January 15, 2026
GPTomics/bioSkills
“A library of bioinformatics protocols for automating genomic data processing with AI agents”
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#179
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In Science
#4
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Description
bioSkills provides a structured collection of technical instructions for performing complex bioinformatics tasks. It enables AI agents to handle specialized workflows such as amplicon clipping, alignment filtering, and quality validation using standard command-line tools.
Bioinformatics engineers can use these skills to automate the processing of SARS-CoV-2 ARTIC, hereditary cancer panels, and ctDNA hot-spot panels, ensuring that primer-derived bases do not interfere with reference confirmation.
WHO IT'S FOR
Bioinformatics engineers
automating alignment processing with AI agents
Genomics data scientists
validating alignment quality before variant calling
Clinical sequencing specialists
processing amplicon BAMs for clinical assays
Computational biologists
subsetting genomic reads by quality and region
30 Days of GitHub Stars
+127 stars↑ 13.4% monthly change
Jul 7Jul 14Jul 21Jul 28Aug 5
Compatibility & Install562 Skills · 9 Compatible agents · 3 categories · 1 install path
Compatible agents
❯Claude Code❯Codex❯Cursor❯Gemini CLI❯OpenClaw❯Amp❯OpenCode❯Antigravity❯Cline
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ScienceAutomationData
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